PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004485808.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 932aa    MW: 106359 Da    PI: 3.9611
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004485808.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.6e-08486505525
                     --SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                     lC+ffa+ G+C +G++C+F H
  XP_004485808.1 486 LCDFFAK-GWCIRGSSCSFLH 505
                     8******.************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0096481507IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.26E-6481505IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.333481508IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-6486505IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 932 aa     Download sequence    Send to blast
MSISDSPVAD DPSLQDDEDD DEEEEEEEEE EIEEEVEEEE EHEEEQEEEE EIEEQQQQQE  60
EEEEEEVEEV EEEEEEEEEE EEEEEEEEVE EEEEEVVEEE EEEVVEEEEE EEEEEEEKEE  120
EVEEVEEEEE VEEVEEEEEE EVDEEKGEEV EEEEVETIEV EEEEEEEEVE EEEVETVEVE  180
EEEEEEEVEE EEAETVEVEE EEEEEEEEEQ EEETIGMEKE EKEEIAMEEE EEKEEEAIKV  240
KEEEEQEEAE AIKIKKEEEQ EAVVEEKEVV PDSLLDADIL NKDLSQHMEF KVKEENMGPV  300
SSVAENPVVM KSSHYMEEND AVFKASVPSH EAITLKKEEF HLKQEISSPP KSSANLISAE  360
DGKNQGLNVD LDNARSPVQR KTFGGGSEPD CNSKASLSDV KDIDSRATKS SSDMGKDVVT  420
GVIQRDNFVE DADGGPNSKK KIMQSEIESI VDVKQTTSRF GHDSWRTRDL SPSADIKDGN  480
KRPAILCDFF AKGWCIRGSS CSFLHIKDSV NNSDQEAEGD SFTALQKREL KLEKGVKERL  540
DGLRTNEEEA SPSWHPSHEK EKFLMRDSLF PESRSAFNAS NNYFTSNHSS YSSRAEGMTA  600
NRNQHMYRGF SNALCSQKLL NSEKEYHALK STFSSEREDL PLVGSSRVPP HSNGYKLKTC  660
SNNWEPSVPF RPSFFITSMN VSSPGDLYDP LRDSIEIPNI GDGSLKASLL IRGSSIQASS  720
QARTCDDSAA VGKHMSDLND DKSSVSSHNK FYENEPNRSS VPRGKDCLST KTEITSGTCS  780
NYQNGYVDVG QHTFSVEDTM ETEKKRTEHD ARHHGEGSGH KKRRVSKDNK IYEMDVDFQT  840
DGSVQKETKA VKIFRAALVD LVKELLKPFW HEGRLSKDAH IVIVKKSVDK VVSTLEAHQI  900
PTTEDTAKQY VSSCRSKIAK LVNGYVSKYG KS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1803823KKRTEHDARHHGEGSGHKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004485808.10.0PREDICTED: pinin isoform X1
TrEMBLA0A072VEF80.0A0A072VEF8_MEDTR; Uncharacterized protein
STRINGGLYMA15G08331.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108052733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.13e-32C3H family protein